scientific-writing — Инструмент для научной работы и написания

--- name: scientific-writing description: This is the core skill for the deep research and writing tool—combining AI-driven deep research with well-formatted written outputs. Every document produced is backed by comprehensive literature sea category: Document Processing source: antigravity tags: [python, react, api, ai, agent, workflow, template, design, document, presentation] url: https://github.com/sickn33/antigravity-awesome-skills/tree/main/skills/scientific-writing --- # Scientific Writing ## Overview **This is the core skill for the deep research and writing tool**—combining AI-driven deep research with well-formatted written outputs. Every document produced is backed by comprehensive literature search and verified citations through the research-lookup skill. Scientific writing is a process for communicating research with precision and clarity. Write manuscripts using IMRAD structure, citations (APA/AMA/Vancouver), figures/tables, and reporting guidelines (CONSORT/STROBE/PRISMA). Apply this skill for research papers and journal submissions. **Critical Principle: Always write in full paragraphs with flowing prose. Never submit bullet points in the final manuscript.** Use a two-stage process: first create section outlines with key points using research-lookup, then convert those outlines into complete paragraphs. ## When to Use This Skill This skill should be used when: - Writing or revising any section of a scientific manuscript (abstract, introduction, methods, results, discussion) - Structuring a research paper using IMRAD or other standard formats - Formatting citations and references in specific styles (APA, AMA, Vancouver, Chicago, IEEE) - Creating, formatting, or improving figures, tables, and data visualizations - Applying study-specific reporting guidelines (CONSORT for trials, STROBE for observational studies, PRISMA for reviews) - Drafting abstracts that meet journal requirements (structured or unstructured) - Preparing manuscripts for submission to specific journals - Improving writing clarity, conciseness, and precision - Ensuring proper use of field-specific terminology and nomenclature - Addressing reviewer comments and revising manuscripts ## Visual Enhancement with Scientific Schematics **⚠️ MANDATORY: Every scientific paper MUST include a graphical abstract plus 1-2 additional AI-generated figures using the scientific-schematics skill.** This is not optional. Scientific papers without visual elements are incomplete. Before finalizing any document: 1. **ALWAYS generate a graphical abstract** as the first visual element 2. Generate at minimum ONE additional schematic or diagram using scientific-schematics 3. Prefer 3-4 total figures for comprehensive papers (graphical abstract + methods flowchart + results visualization + conceptual diagram) ### Graphical Abstract (REQUIRED) **Every scientific writeup MUST include a graphical abstract.** This is a visual summary of your paper that: - Appears before or immediately after the text abstract - Captures the entire paper's key message in one image - Is suitable for journal table of contents display - Uses landscape orientation (typically 1200x600px) **Generate the graphical abstract FIRST:** ```bash python scripts/generate_schematic.py "Graphical abstract for [paper title]: [brief description showing workflow from input → methods → key findings → conclusions]" -o figures/graphical_abstract.png ``` **Graphical Abstract Requirements:** - **Content**: Visual summary showing workflow, key methods, main findings, and conclusions - **Style**: Clean, professional, suitable for journal TOC - **Elements**: Include 3-5 key steps/concepts with connecting arrows or flow - **Text**: Minimal labels, large readable fonts - Log: `[HH:MM:SS] GENERATED: Graphical abstract for paper summary` ### Additional Figures (GENERATE EXTENSIVELY) **⚠️ CRITICAL: Use BOTH scientific-schematics AND generate-image EXTENSIVELY throughout all documents.** Every document should be richly illustrated. Generate figures liberally - when in doubt, add a visual. **MINIMUM Figure Requirements:** | Document Type | Minimum | Recommended | |--------------|---------|-------------| | Research Papers | 5 | 6-8 | | Literature Reviews | 4 | 5-7 | | Market Research | 20 | 25-30 | | Presentations | 1/slide | 1-2/slide | | Posters | 6 | 8-10 | | Grants | 4 | 5-7 | | Clinical Reports | 3 | 4-6 | **Use scientific-schematics EXTENSIVELY for technical diagrams:** ```bash python scripts/generate_schematic.py "your diagram description" -o figures/output.png ``` - Study design and methodology flowcharts (CONSORT, PRISMA, STROBE) - Conceptual framework diagrams - Experimental workflow illustrations - Data analysis pipeline diagrams - Biological pathway or mechanism diagrams - System architecture visualizations - Neural network architectures - Decision trees, algorithm flowcharts - Comparison matrices, timeline diagrams - Any technical concept that benefits from schematic visualization **Use generate-image EXTENSIVELY for visual content:** ```bash python scripts/generate_image.py "your image description" -o figures/output.png ``` - Photorealistic illustrations of concepts - Medical/anatomical illustrations - Environmental/ecological scenes - Equipment and lab setup visualizations - Artistic visualizations, infographics - Cover images, header graphics - Product mockups, prototype visualizations - Any visual that enhances understanding or engagement The